GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs12220238 | 1 | rs10824078 | chr10:75892120 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.61 | 5.4E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824083 | chr10:75911342 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.37 | 1.58E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824084 | chr10:75911415 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.37 | 1.58E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824085 | chr10:75911984 | ADK | chr10:75910965-76469059:+ | 0.29 | 4.5 | 9.08E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824088 | chr10:75921490 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.55 | 7.32E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824088 | chr10:75921490 | AP3M1 | chr10:75880016-75910826:- | 0.3 | 3.86 | 0.000132 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824090 | chr10:75923446 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.34 | 1.82E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824096 | chr10:75937554 | ADK | chr10:75910965-76469059:+ | 0.32 | 4.75 | 2.93E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824096 | chr10:75937554 | AP3M1 | chr10:75880016-75910826:- | 0.31 | 3.98 | 8.08E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824098 | chr10:75943579 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.32 | 2.01E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824099 | chr10:75943625 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.57 | 6.71E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824099 | chr10:75943625 | AP3M1 | chr10:75880016-75910826:- | 0.31 | 4.02 | 7.01E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824101 | chr10:75947438 | ADK | chr10:75910965-76469059:+ | 0.33 | 4.75 | 2.9E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824101 | chr10:75947438 | AP3M1 | chr10:75880016-75910826:- | 0.33 | 4.21 | 3.22E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824101 | chr10:75947438 | MYST4 | chr10:76586379-76792639:+ | 0.24 | 3.86 | 0.000131 | Soluble interleukin-2 receptor subunit alpha |